Publications
2023
Di Palma F., Abate C., Decherchi S., Cavalli A.
Ligandability and druggability assessment via machine learning
Wiley Interdisciplinary Reviews: Computational Molecular Science, vol. 13, (no. 5)
2023
Majumdar S., Di Palma F., Spyrakis F., Decherchi S., Cavalli A.
Molecular Dynamics and Machine Learning Give Insights on the Flexibility-Activity Relationships in Tyrosine Kinome
Journal of Chemical Information and Modeling, vol. 63, (no. 15), pp. 4814-4826
2023
Scarano N., Di Palma F., Origlia N., Musumeci F., Schenone S., Spinelli S., Passalacqua M., Zocchi E., Sturla L., Cichero E., Cavalli A.
New Insights into the LANCL2-ABA Binding Mode towards the Evaluation of New LANCL Agonists
Pharmaceutics, vol. 15, (no. 12)
2022
Di Palma F., Decherchi S., Pardo-Avila F., Succi S., Levitt M., Von Heijne G., Cavalli A.
Probing Interplays between Human XBP1u Translational Arrest Peptide and 80S Ribosome
Journal of Chemical Theory and Computation, vol. 18, (no. 3), pp. 1905-1914
2021
Di Palma F., Succi S., Sterpone F., Lauricella M., Perot F., Melchionna S.
Three-stage multiscale modelling of the NMDA neuroreceptor
Molecular Physics, vol. 119, (no. 19-20)
2019
Di Palma F., Daino G.L., Ramaswamy V.K., Corona A., Frau A., Fanunza E., Vargiu A.V., Tramontano E., Ruggerone P.
Relevance of Ebola virus VP35 homo-dimerization on the type I interferon cascade inhibition
Antiviral Chemistry and Chemotherapy, vol. 27
2018
Ramaswamy V.K., Di Palma F., Vargiu A.V., Corona A., Piano D., Ruggerone P., Zinzula L., Tramontano E.
Insights into the homo-oligomerization properties of N-terminal coiled-coil domain of Ebola virus VP35 protein
Virus Research, vol. 247, pp. 61-70
2017
Di Palma F., Tramontano A.
Dynamics behind affinity maturation of an anti-HCMV antibody family influencing antigen binding
FEBS Letters, vol. 591, (no. 18), pp. 2936-2950
2015
Di Palma F., Bottaro S., Bussi G.
Kissing loop interaction in adenine riboswitch: Insights from umbrella sampling simulations
BMC Bioinformatics, vol. 16, (no. 9)
2015
Di Palma F., Colizzi F., Bussi G.
Using reweighted pulling simulations to characterize conformational changes in riboswitches
Methods in Enzymology, vol. 553, pp. 139-162
2014
Bottaro S., Di Palma F., Bussi G.
The role of nucleobase interactions in RNA structure and dynamics
Nucleic Acids Research, vol. 42, (no. 21), pp. 13306-13314
2013
Di Palma F., Colizzi F., Bussi G.
Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch
RNA, vol. 19, (no. 11), pp. 1517-1524
2011
Falconi M., Oteri F., Di Palma F., Pandey S., Battistoni A., Desideri A.
Structural-dynamical investigation of the ZnuA histidine-rich loop: Involvement in zinc management and transport
Journal of Computer-Aided Molecular Design, vol. 25, (no. 2), pp. 181-194